DM42_4321 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

DM42_4321

annotation not available (341 aa)

Predicted Functional Partners:

DM42_4320

0.983

DM42_4319

0.982

DM42_4318

0.981

WL94_38740

0.953

WL94_35420

0.951

WL94_28030

0.950

WI67_07650

0.949

WL94_28775

0.948

WL94_35415

0.948

WL94_28780

0.947

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4318	DM42_4319	DM42_4318	DM42_4319	annotation not available	annotation not available	0.989
DM42_4318	DM42_4320	DM42_4318	DM42_4320	annotation not available	annotation not available	0.989
DM42_4318	DM42_4321	DM42_4318	DM42_4321	annotation not available	annotation not available	0.981
DM42_4318	WI67_07650	DM42_4318	DM42_153	annotation not available	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	0.959
DM42_4318	WL94_28775	DM42_4318	DM42_90	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.959
DM42_4318	WL94_35420	DM42_4318	DM42_5709	annotation not available	Putative ribose/galactose/methyl galactoside import ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system	0.960
DM42_4319	DM42_4318	DM42_4319	DM42_4318	annotation not available	annotation not available	0.989
DM42_4319	DM42_4320	DM42_4319	DM42_4320	annotation not available	annotation not available	0.989
DM42_4319	DM42_4321	DM42_4319	DM42_4321	annotation not available	annotation not available	0.982
DM42_4319	WI67_07650	DM42_4319	DM42_153	annotation not available	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	0.960
DM42_4319	WL94_28775	DM42_4319	DM42_90	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.959
DM42_4319	WL94_35420	DM42_4319	DM42_5709	annotation not available	Putative ribose/galactose/methyl galactoside import ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system	0.960
DM42_4320	DM42_4318	DM42_4320	DM42_4318	annotation not available	annotation not available	0.989
DM42_4320	DM42_4319	DM42_4320	DM42_4319	annotation not available	annotation not available	0.989
DM42_4320	DM42_4321	DM42_4320	DM42_4321	annotation not available	annotation not available	0.983
DM42_4320	WL94_28030	DM42_4320	DM42_154	annotation not available	annotation not available	0.955
DM42_4320	WL94_28780	DM42_4320	DM42_89	annotation not available	annotation not available	0.955
DM42_4320	WL94_35415	DM42_4320	DM42_5710	annotation not available	annotation not available	0.953
DM42_4320	WL94_38740	DM42_4320	DM42_5985	annotation not available	annotation not available	0.963
DM42_4321	DM42_4318	DM42_4321	DM42_4318	annotation not available	annotation not available	0.981

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