STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_433annotation not available (528 aa)    
Predicted Functional Partners:
DM42_435
annotation not available
 
 
 0.729
rlpA
Rare lipoa family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
  
  
 0.726
DM42_1975
annotation not available
 
   
 0.719
gloB
GSH_gloB: hydroxyacylglutathione hydrolase
     
 0.689
mltB
mltB: lytic murein transglycosylase B
 
  
 0.636
DM42_1305
annotation not available
   
  
 0.632
rnhA
Rnase h family protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids
       0.609
skp
Outer membrane family protein; Belongs to the skp family
  
   
 0.596
DM42_888
annotation not available
  
   
 0.595
dnaQ
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease
  
    0.585
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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