STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4362annotation not available (404 aa)    
Predicted Functional Partners:
DM42_4361
annotation not available
 
   0.891
DM42_4363
annotation not available
 
     0.866
DM42_4359
annotation not available
 
   
 0.844
rhlE
Atp-dependent rna helicase rhle; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA
   
 0.769
DM42_2742
Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family
   
 0.769
rhlE_1
Dead/deah box helicase family protein; Belongs to the DEAD box helicase family
   
 0.769
dbpA
Atp-dependent rna helicase dbpa; Belongs to the DEAD box helicase family
   
 0.769
DM42_5174
annotation not available
   
 0.769
DM42_3732
annotation not available
 
  
 0.676
DM42_34
annotation not available
 
     0.540
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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