Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_14315

annotation not available (386 aa)

Predicted Functional Partners:

WL94_24175

0.740

WI67_21510

0.694

WI67_09765

0.692

DM42_2153

0.675

VL15_35285

0.667

WI67_02600

0.651

WI67_16665

0.650

WL94_30795

0.647

WI67_21820

0.635

WL94_16665

0.632

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2153	VL15_35285	DM42_2153	DM42_1402	Uncharacterized protein	annotation not available	0.584
DM42_2153	WI67_02600	DM42_2153	DM42_1272	Uncharacterized protein	Uncharacterized protein	0.511
DM42_2153	WI67_09765	DM42_2153	DM42_3266	Uncharacterized protein	annotation not available	0.738
DM42_2153	WI67_16665	DM42_2153	DM42_1881	Uncharacterized protein	annotation not available	0.709
DM42_2153	WI67_21510	DM42_2153	DM42_4189	Uncharacterized protein	annotation not available	0.749
DM42_2153	WI67_21820	DM42_2153	DM42_4123	Uncharacterized protein	Uncharacterized protein	0.695
DM42_2153	WL94_14315	DM42_2153	DM42_4371	Uncharacterized protein	annotation not available	0.675
DM42_2153	WL94_16665	DM42_2153	DM42_2973	Uncharacterized protein	Regulator	0.498
DM42_2153	WL94_24175	DM42_2153	DM42_2805	Uncharacterized protein	annotation not available	0.717
DM42_2153	WL94_30795	DM42_2153	DM42_3073	Uncharacterized protein	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins	0.689
VL15_35285	DM42_2153	DM42_1402	DM42_2153	annotation not available	Uncharacterized protein	0.584
VL15_35285	WI67_02600	DM42_1402	DM42_1272	annotation not available	Uncharacterized protein	0.735
VL15_35285	WI67_09765	DM42_1402	DM42_3266	annotation not available	annotation not available	0.676
VL15_35285	WI67_21510	DM42_1402	DM42_4189	annotation not available	annotation not available	0.686
VL15_35285	WI67_21820	DM42_1402	DM42_4123	annotation not available	Uncharacterized protein	0.732
VL15_35285	WL94_14315	DM42_1402	DM42_4371	annotation not available	annotation not available	0.667
VL15_35285	WL94_16665	DM42_1402	DM42_2973	annotation not available	Regulator	0.691
VL15_35285	WL94_24175	DM42_1402	DM42_2805	annotation not available	annotation not available	0.431
VL15_35285	WL94_30795	DM42_1402	DM42_3073	annotation not available	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins	0.698
WI67_02600	DM42_2153	DM42_1272	DM42_2153	Uncharacterized protein	Uncharacterized protein	0.511

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Network

Neighborhood

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Cooccurrence

Databases

Coexpression

Textmining

Fusion

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