STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcEMalonate_gamma: malonate decarboxylase, gamma subunit (235 aa)    
Predicted Functional Partners:
mdcA
mdcA: malonate decarboxylase, alpha subunit
 
 
 0.991
mdcB
Triphosphoribosyl-dephospho-coa synthase mdcb; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase
 
  
 0.986
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein
 
  
 0.985
mdcG
malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase
 
     0.977
DM42_5551
annotation not available
  
 0.977
mdcD
Malonate_beta: malonate decarboxylase, beta subunit
 
     0.975
mdcH
annotation not available
 
  
 0.966
madM
malonate_madM: malonate transporter, MadM subunit
 
  
 0.876
madL
malonate_madL: malonate transporter, MadL subunit
 
     0.825
accA
Acetyl-coa carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
  
 
 0.680
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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