STRINGSTRING
DM42_4499 protein (Burkholderia cepacia) - STRING interaction network
"DM42_4499" - HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4499HAD-SF-IA-v1- HAD hydrolase, IA, variant 1 family protein (240 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (373 aa)
   
 
  0.943
DM42_882
ribE- riboflavin synthase, alpha subunit (209 aa)
   
 
  0.913
WI67_21175
ribE- riboflavin synthase, alpha subunit (237 aa)
   
 
  0.913
ribF
ribF- riboflavin biosynthesis protein RibF; Belongs to the ribF family (330 aa)
   
 
    0.905
msuE
FMN_reduc_MsuE- FMN reductase (186 aa)
     
 
    0.901
WI67_30095
annotation not available (216 aa)
     
 
    0.901
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (171 aa)
       
    0.901
hpaC
FMN reductase; hpaC- 4-hydroxyphenylacetate 3-monooxygenase, reductase component (181 aa)
         
    0.900
WL94_10680
annotation not available (323 aa)
              0.766
DM42_4497
annotation not available (376 aa)
              0.510
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (10%) [HD]