STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
madMmalonate_madM: malonate transporter, MadM subunit (255 aa)    
Predicted Functional Partners:
madL
malonate_madL: malonate transporter, MadL subunit
 
    0.975
mdcA
mdcA: malonate decarboxylase, alpha subunit
 
    0.929
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein
 
    0.902
mdcB
Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase
 
    0.877
mdcE
Malonate_gamma: malonate decarboxylase, gamma subunit
 
    0.875
mdcD
Malonate_beta: malonate decarboxylase, beta subunit
 
    0.835
DM42_6065
annotation not available
 
    0.801
WL94_17840
annotation not available
 
  
 0.753
mdcG
malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase
 
     0.714
WI67_02195
annotation not available
  
    0.403
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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