STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_458annotation not available (136 aa)    
Predicted Functional Partners:
DM42_457
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family
 
 
 0.978
clpB
Atp-dependent clp protease atp-binding subunit clpb; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
 
 
 0.562
DM42_7163
Atp-dependent clp protease atp-binding subunit clpc; Belongs to the ClpA/ClpB family
 
 
 0.547
htpG
Histidine kinase-, dna gyrase b-, and hsp90-like atpase family protein; Molecular chaperone. Has ATPase activity
  
 
 0.545
clpA
Atp-dependent clp protease atp-binding subunit clpa; Belongs to the ClpA/ClpB family
 
 
 0.543
clpV
VI_ClpV1: type VI secretion ATPase, ClpV1 family
  
 
 0.482
DM42_456
annotation not available
       0.450
DM42_5936
annotation not available
   
 
 0.430
DM42_4838
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family
 
 
 
0.424
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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