STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4604CDF: cation diffusion facilitator transporter family protein (365 aa)    
Predicted Functional Partners:
DM42_4605
annotation not available
 
   
 0.774
DM42_229
annotation not available
 
      0.746
DM42_4603
annotation not available
  
  
 0.598
DM42_4602
annotation not available
  
    0.526
DM42_593
annotation not available
 
   
 0.506
DM42_4600
ATPase-IB1_Cu: copper-translocating P-type ATPase
 
  
 0.445
czcA
Cobalt-zinc-cadmium resistance protein czca; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 
  
 0.411
atpA
F-type h+/na+-transporting atpase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
   
    0.404
merR
Merr family transcriptional regulator, mercuric resistance operon regulatory protein; merR: Hg(II)-responsive transcriptional regulator
 
   
 0.402
DM42_1245
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
  
    0.400
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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