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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_01575annotation not available (355 aa)    
Predicted Functional Partners:
WL94_01570
annotation not available
 
  
 0.857
chqB
annotation not available
   
 0.852
WI67_18995
annotation not available
 
     0.789
WL94_01560
annotation not available
 
     0.728
WL94_37415
Catechol_proteo: catechol 1,2-dioxygenase
   
 0.670
WI67_19010
annotation not available
 
     0.652
WL94_27205
Catechol_proteo: catechol 1,2-dioxygenase
   
 0.645
WI67_07110
MMSDH: methylmalonate-semialdehyde dehydrogenase
 
  
 0.629
WL94_11850
MMSDH: methylmalonate-semialdehyde dehydrogenase
  
  
 0.629
WL94_09155
MMSDH: methylmalonate-semialdehyde dehydrogenase
 
  
 0.629
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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