STRINGSTRING
dgoT protein (Burkholderia cepacia) - STRING interaction network
"dgoT" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoTannotation not available (463 aa)    
Predicted Functional Partners:
garD
galactar-dH20- galactarate dehydratase (517 aa)
 
   
  0.683
gudD
Glucar-dehydr- glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family (450 aa)
 
 
  0.647
WL94_02950
annotation not available (465 aa)
 
      0.560
DM42_4722
annotation not available (287 aa)
              0.479
WL94_35005
annotation not available (341 aa)
 
          0.456
kdgD
kdgD- 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family (304 aa)
 
   
  0.446
DM42_4721
Conserved hypothetical protein (122 aa)
              0.412
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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