STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4737Conserved hypothetical protein (449 aa)    
Predicted Functional Partners:
DM42_4324
annotation not available
 
   
 0.748
DM42_6831
annotation not available
  
     0.736
DM42_4810
Putative dna primase/helicase; Primase C terminal 2 family protein
  
     0.683
DM42_4939
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein
  
     0.626
DM42_6752
annotation not available
  
     0.617
DM42_6069
annotation not available
  
     0.610
DM42_470
Hypothetical protein; Porin; OMP85_target: outer membrane insertion C-terminal signal domain protein
  
     0.609
DM42_2695
annotation not available
  
     0.589
virB5
Type iv secretion system protein virb5; virB5: P-type DNA transfer protein VirB5
  
   
 0.588
DM42_5573
annotation not available
  
 
   0.582
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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