STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ChoXGlycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein (314 aa)    
Predicted Functional Partners:
choW
Glycine betaine/proline transport system permease protein; ABC_choXWV_perm: choline ABC transporter, permease protein
 
 0.989
ProV
Glycine betaine/proline transport system atp-binding protein; Glycine betaine/L-proline ABC transporter ATP-binding protein; proV: glycine betaine/L-proline transport ATP binding subunit
 
 0.979
DM42_4742
HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein
       0.770
DM42_4743
annotation not available
       0.632
DM42_4461
annotation not available
  
  
 0.612
DM42_5883
annotation not available
  
  
 0.612
betI
Tetr/acrr family transcriptional regulator, transcriptional repressor of bet genes; Repressor involved in choline regulation of the bet genes
 
   
 0.605
DM42_5666
annotation not available
  
     0.563
DM42_5670
annotation not available
 
    0.546
DM42_4744
PC_PLC: phospholipase C, phosphocholine-specific
       0.532
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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