STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4742HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein (225 aa)    
Predicted Functional Partners:
ChoX
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
       0.770
DM42_4743
annotation not available
       0.691
hisZ
Atp phosphoribosyltransferase, regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
 
    0.604
DM42_4744
PC_PLC: phospholipase C, phosphocholine-specific
     
 0.589
hom_1
annotation not available
 
  
 0.476
dapC
N-succinyldiaminopimelate aminotransferase; dapC_gpp: succinyldiaminopimelate transaminase
 
 
 
 0.459
tatB
Sec-independent protein translocase protein tatb; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation
  
     0.455
DM42_3013
Aspartate kinase, monofunctional class; Belongs to the aspartokinase family
 
   
 0.437
DM42_4740
annotation not available
       0.412
pheA
Chorismate mutase / prephenate dehydratase; CM_P2: chorismate mutase
 
  
 0.412
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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