STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
DM42_4847Putative phosphofructokinase pfkb; Belongs to the carbohydrate kinase PfkB family (311 aa)    
Predicted Functional Partners:
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family
    
 0.961
fba
Fructose-bisphosphate aldolase, class ii, calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis
 
 
 0.960
tal
Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
  
 
 0.936
tkt
Belongs to the transketolase family
  
 
 0.934
DM42_156
annotation not available
    
 0.918
DM42_2035
Belongs to the carbohydrate kinase PfkB family
    
 0.918
DM42_2472
Hypothetical protein; Carbohydrate kinase
    
 0.914
DM42_1070
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
     
  0.900
DM42_2473
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
     
  0.900
DM42_3747
LPS biosynthesis protein; GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family
     
  0.900
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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