STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_485TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein (326 aa)    
Predicted Functional Partners:
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide
 
 0.650
DM42_6719
annotation not available
 
 
   0.630
DM42_1047
annotation not available
  
 0.601
DM42_3582
Putative membrane protein; Conserved hypothetical protein
 
    0.596
DM42_484
annotation not available
  
 0.560
DM42_7120
Putative membrane protein; Conserved hypothetical protein
 
    0.524
DM42_7093
Permease; pfpI: intracellular protease, PfpI family protein
 
    0.523
DM42_7322
annotation not available
 
     0.518
DM42_4155
annotation not available
 
 0.515
DM42_7148
annotation not available
 
 
 0.501
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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