STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4853outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein (498 aa)    
Predicted Functional Partners:
WL94_07415
RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.913
DM42_4855
ccmA: heme ABC exporter, ATP-binding protein CcmA
 
   
 0.887
WL94_07425
annotation not available
 
   
 0.883
WL94_34115
annotation not available
 
 
 0.778
DM42_7397
annotation not available
 
 
 0.777
acrA
annotation not available
 
 
 0.774
WL94_28905
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.762
WL94_09545
Hemolysin secretion protein D; RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.720
DM42_4159
RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.711
WL94_34120
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.710
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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