STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4853outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein (498 aa)    
Predicted Functional Partners:
MexA
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.966
DM42_7397
annotation not available
 
 0.966
acrA
annotation not available
 
 0.965
DM42_76
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.964
DM42_4159
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit
 
 0.956
DM42_5875
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.956
DM42_2461
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 0.952
acrB
annotation not available
 0.952
DM42_7396
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 0.952
DM42_75
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 0.949
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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