STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_486annotation not available (341 aa)    
Predicted Functional Partners:
DM42_487
annotation not available
 
     0.776
DM42_488
annotation not available
 
     0.730
DM42_489
annotation not available
 
    0.689
DM42_5507
Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; AraC family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.677
DM42_7030
Deor family transcriptional regulator, aga operon transcriptional repressor; deoR C terminal sensor domain protein
  
 
 
 0.638
glpR_3
annotation not available
  
 
 
 0.634
DM42_4739
annotation not available
  
 
 
 0.623
DM42_490
Putative spermidine/putrescine transport system atp-binding protein; Belongs to the ABC transporter superfamily
     
 0.617
cpdA
Calcineurin-like phosphoesterase family protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
 
     0.570
deoR
annotation not available
  
 
 
 0.546
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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