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DM42_4898 protein (Burkholderia cepacia) - STRING interaction network
"DM42_4898" - annotation not available in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4898annotation not available (319 aa)    
Predicted Functional Partners:
DM42_2977
comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (826 aa)
 
     
  0.729
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (917 aa)
   
 
  0.642
DM42_4900
ribP_PPkin- ribose-phosphate diphosphokinase family protein (328 aa)
              0.630
DM42_4897
annotation not available (577 aa)
              0.469
WL94_10715
annotation not available (613 aa)
 
     
  0.458
DM42_5617
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (628 aa)
     
 
  0.447
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (683 aa)
     
 
  0.447
DM42_3834
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (508 aa)
     
 
  0.447
rpoS
rpoS_proteo- RNA polymerase sigma factor RpoS (362 aa)
     
 
  0.447
rpoH
rpoH_proteo- alternative sigma factor RpoH (311 aa)
     
 
  0.447
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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