DM42_4928 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

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[Homology]

Score

DM42_4928

annotation not available (244 aa)

Predicted Functional Partners:

DM42_4929

0.993

DM42_4930

0.982

DM42_4927

0.980

WL94_33630

0.946

WL94_33635

0.945

WL94_10765

0.943

WL94_27400

0.940

DM42_285

0.929

WI67_00555

0.921

WI67_13475

0.920

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_285	DM42_4927	DM42_285	DM42_4927	annotation not available	annotation not available	0.956
DM42_285	DM42_4928	DM42_285	DM42_4928	annotation not available	annotation not available	0.929
DM42_285	DM42_4930	DM42_285	DM42_4930	annotation not available	annotation not available	0.968
DM42_285	WI67_00555	DM42_285	DM42_1694	annotation not available	annotation not available	0.965
DM42_285	WI67_13475	DM42_285	DM42_2570	annotation not available	annotation not available	0.965
DM42_285	WL94_10765	DM42_285	DM42_4479	annotation not available	annotation not available	0.900
DM42_285	WL94_27400	DM42_285	DM42_286	annotation not available	annotation not available	0.996
DM42_285	WL94_33635	DM42_285	DM42_6615	annotation not available	annotation not available	0.967
DM42_4927	DM42_285	DM42_4927	DM42_285	annotation not available	annotation not available	0.956
DM42_4927	DM42_4928	DM42_4927	DM42_4928	annotation not available	annotation not available	0.980
DM42_4927	DM42_4929	DM42_4927	DM42_4929	annotation not available	annotation not available	0.994
DM42_4927	DM42_4930	DM42_4927	DM42_4930	annotation not available	annotation not available	0.983
DM42_4927	WI67_00555	DM42_4927	DM42_1694	annotation not available	annotation not available	0.945
DM42_4927	WI67_13475	DM42_4927	DM42_2570	annotation not available	annotation not available	0.954
DM42_4927	WL94_10765	DM42_4927	DM42_4479	annotation not available	annotation not available	0.967
DM42_4927	WL94_27400	DM42_4927	DM42_286	annotation not available	annotation not available	0.955
DM42_4927	WL94_33630	DM42_4927	DM42_6616	annotation not available	annotation not available	0.958
DM42_4927	WL94_33635	DM42_4927	DM42_6615	annotation not available	annotation not available	0.956
DM42_4928	DM42_285	DM42_4928	DM42_285	annotation not available	annotation not available	0.929
DM42_4928	DM42_4927	DM42_4928	DM42_4927	annotation not available	annotation not available	0.980

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