STRINGSTRING
xylH protein (Burkholderia cepacia) - STRING interaction network
"xylH" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylHannotation not available (63 aa)    
Predicted Functional Partners:
dmpH
catechol_dmpH- 4-oxalocrotonate decarboxylase (262 aa)
 
   
  0.994
DM42_4996
Catechol_2_3- catechol 2,3 dioxygenase (314 aa)
 
   
  0.985
DM42_4994
OH_muco_semi_DH- 2-hydroxymuconic semialdehyde dehydrogenase (503 aa)
 
   
  0.981
DM42_4991
4OH_2_O_val_ald- 4-hydroxy-2-oxovalerate aldolase (348 aa)
 
     
  0.943
DM42_4992
ac_ald_DH_ac- acetaldehyde dehydrogenase (306 aa)
 
     
  0.920
DM42_4988
annotation not available (273 aa)
 
     
  0.909
DM42_4993
catechol_dmpE- 2-oxopent-4-enoate hydratase (260 aa)
 
     
  0.892
WI67_26980
annotation not available (62 aa)
   
   
    0.835
DM42_6662
annotation not available (75 aa)
         
    0.800
DM42_4997
annotation not available (109 aa)
 
          0.798
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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