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pcaD protein (Burkholderia cepacia) - STRING interaction network
"pcaD" - protocat_pcaD: 3-oxoadipate enol-lactonase in Burkholderia cepacia
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaDprotocat_pcaD- 3-oxoadipate enol-lactonase (261 aa)    
Predicted Functional Partners:
pcaC
decarb_PcaC- 4-carboxymuconolactone decarboxylase (128 aa)
   
  0.999
WL94_26065
annotation not available (132 aa)
   
  0.993
pcaJ
annotation not available (218 aa)
       
  0.970
catC
Muco_delta- muconolactone delta-isomerase (96 aa)
 
   
  0.962
pcaI
annotation not available (238 aa)
       
  0.960
WI67_09810
annotation not available (144 aa)
   
  0.933
pcaB
protocat_pcaB- 3-carboxy-cis,cis-muconate cycloisomerase (452 aa)
 
     
  0.922
DM42_6658
annotation not available (233 aa)
 
   
  0.922
WI67_22655
annotation not available (184 aa)
         
    0.900
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway (235 aa)
 
     
  0.781
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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