• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
pcaB protein (Burkholderia cepacia) - STRING interaction network
"pcaB" - protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaBprotocat_pcaB- 3-carboxy-cis,cis-muconate cycloisomerase (452 aa)    
Predicted Functional Partners:
pcaC
decarb_PcaC- 4-carboxymuconolactone decarboxylase (128 aa)
 
 
  0.997
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway (197 aa)
 
   
  0.990
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway (235 aa)
 
 
  0.989
WL94_26065
annotation not available (132 aa)
 
 
  0.973
WI67_09810
annotation not available (144 aa)
 
 
  0.949
DM42_6658
annotation not available (233 aa)
 
 
  0.945
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (539 aa)
 
   
  0.944
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate (1354 aa)
   
 
  0.942
pcaD
protocat_pcaD- 3-oxoadipate enol-lactonase (261 aa)
 
     
  0.922
WI67_22655
annotation not available (184 aa)
         
    0.900
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (11%) [HD]