Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_17440

annotation not available (347 aa)

Predicted Functional Partners:

WL94_17435

0.996

WL94_17430

0.975

WI67_23550

0.863

WL94_31995

0.860

WL94_32005

0.846

WI67_23545

0.827

WL94_32000

0.827

WL94_12220

0.800

WI67_11995

0.714

trxB

0.695

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_11995	WL94_17440	DM42_2858	DM42_511	annotation not available	annotation not available	0.714
WI67_11995	trxB	DM42_2858	DM42_867	annotation not available	TRX_reduct- thioredoxin-disulfide reductase; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	0.705
WI67_23545	WI67_23550	DM42_3710	DM42_3709	annotation not available	annotation not available	0.994
WI67_23545	WL94_12220	DM42_3710	DM42_3708	annotation not available	annotation not available	0.967
WI67_23545	WL94_17430	DM42_3710	DM42_513	annotation not available	annotation not available	0.813
WI67_23545	WL94_17435	DM42_3710	DM42_512	annotation not available	annotation not available	0.842
WI67_23545	WL94_17440	DM42_3710	DM42_511	annotation not available	annotation not available	0.827
WI67_23545	WL94_31995	DM42_3710	DM42_1815	annotation not available	phnS2- putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	0.821
WI67_23545	WL94_32000	DM42_3710	DM42_1814	annotation not available	phnT2- putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily	0.827
WI67_23545	WL94_32005	DM42_3710	DM42_1813	annotation not available	phnU2- putative 2-aminoethylphosphonate ABC transporter, permease protein	0.838
WI67_23550	WI67_23545	DM42_3709	DM42_3710	annotation not available	annotation not available	0.994
WI67_23550	WL94_12220	DM42_3709	DM42_3708	annotation not available	annotation not available	0.981
WI67_23550	WL94_17430	DM42_3709	DM42_513	annotation not available	annotation not available	0.839
WI67_23550	WL94_17435	DM42_3709	DM42_512	annotation not available	annotation not available	0.800
WI67_23550	WL94_17440	DM42_3709	DM42_511	annotation not available	annotation not available	0.863
WI67_23550	WL94_31995	DM42_3709	DM42_1815	annotation not available	phnS2- putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	0.857
WI67_23550	WL94_32000	DM42_3709	DM42_1814	annotation not available	phnT2- putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily	0.817
WI67_23550	WL94_32005	DM42_3709	DM42_1813	annotation not available	phnU2- putative 2-aminoethylphosphonate ABC transporter, permease protein	0.816
WL94_12220	WI67_23545	DM42_3708	DM42_3710	annotation not available	annotation not available	0.967
WL94_12220	WI67_23550	DM42_3708	DM42_3709	annotation not available	annotation not available	0.981

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Neighborhood

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Experiments

Coexpression

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