STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5115Ribosomal protein s12 methylthiotransferase accessory factor; Cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain (746 aa)    
Predicted Functional Partners:
DM42_5119
annotation not available
 
     0.882
DM42_5118
annotation not available
 
     0.878
DM42_6694
annotation not available
 
   
 0.750
DM42_6703
annotation not available
  
    0.740
DM42_5683
annotation not available
  
     0.726
DM42_6961
Thermolysin metallopeptidase, catalytic domain protein; Extracellular zinc metalloprotease
  
     0.682
DM42_27
annotation not available
  
     0.612
DM42_5116
RNP_Burkhold: ribosomal natural product, two-chain TOMM family protein
       0.595
DM42_6695
annotation not available
 
     0.593
DM42_6702
Diaminopimelate decarboxylase; Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
  
     0.588
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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