DM42_5168 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_5168

Glc operon protein glcg; Uncharacterized protein (134 aa)

Predicted Functional Partners:

DM42_5169

0.925

DM42_5170

0.925

glcD

0.875

glcB

0.850

glcE

0.718

glcC

0.621

glcF

0.610

DM42_1105

0.542

aceB

0.494

DM42_6532

0.426

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1105	DM42_5168	DM42_1105	DM42_5168	annotation not available	Glc operon protein glcg; Uncharacterized protein	0.542
DM42_1105	DM42_5169	DM42_1105	DM42_5169	annotation not available	annotation not available	0.969
DM42_1105	DM42_5170	DM42_1105	DM42_5170	annotation not available	annotation not available	0.972
DM42_1105	aceB	DM42_1105	DM42_3047	annotation not available	Belongs to the malate synthase family	0.697
DM42_1105	glcB	DM42_1105	DM42_5167	annotation not available	Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA	0.697
DM42_1105	glcD	DM42_1105	DM42_5171	annotation not available	annotation not available	0.805
DM42_1105	glcE	DM42_1105	DM42_1106	annotation not available	annotation not available	0.990
DM42_1105	glcF	DM42_1105	DM42_1107	annotation not available	annotation not available	0.986
DM42_5168	DM42_1105	DM42_5168	DM42_1105	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.542
DM42_5168	DM42_5169	DM42_5168	DM42_5169	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.925
DM42_5168	DM42_5170	DM42_5168	DM42_5170	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.925
DM42_5168	DM42_6532	DM42_5168	DM42_6532	Glc operon protein glcg; Uncharacterized protein	Hypothetical protein; FAD linked oxidase, C-terminal domain protein	0.426
DM42_5168	aceB	DM42_5168	DM42_3047	Glc operon protein glcg; Uncharacterized protein	Belongs to the malate synthase family	0.494
DM42_5168	glcB	DM42_5168	DM42_5167	Glc operon protein glcg; Uncharacterized protein	Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA	0.850
DM42_5168	glcC	DM42_5168	DM42_5172	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.621
DM42_5168	glcD	DM42_5168	DM42_5171	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.875
DM42_5168	glcE	DM42_5168	DM42_1106	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.718
DM42_5168	glcF	DM42_5168	DM42_1107	Glc operon protein glcg; Uncharacterized protein	annotation not available	0.610
DM42_5169	DM42_1105	DM42_5169	DM42_1105	annotation not available	annotation not available	0.969
DM42_5169	DM42_5168	DM42_5169	DM42_5168	annotation not available	Glc operon protein glcg; Uncharacterized protein	0.925

page 1 of 5

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About