STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5219Dihydrodipicolinate synthetase family protein; Belongs to the DapA family (298 aa)    
Predicted Functional Partners:
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
 
 
 0.963
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate
  
 
 0.928
DM42_5218
L-fuculose-phosphate aldolase; Class II Aldolase and Adducin N-terminal domain protein
 
   
 0.882
DM42_5220
annotation not available
       0.850
DM42_6459
annotation not available
 
 
 0.771
DM42_6003
4-hydroxy-tetrahydrodipicolinate reductase; Conserved hypothetical protein
  
 
 0.770
hom_1
annotation not available
  
 
 0.725
DM42_5217
annotation not available
 
    0.674
DM42_6447
L-fuculose-phosphate aldolase; Class II Aldolase and Adducin N-terminal domain protein
 
   
 0.650
DM42_6440
L-fuculose-phosphate aldolase; Class II Aldolase and Adducin N-terminal domain protein
 
   
 0.530
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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