STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5332annotation not available (499 aa)    
Predicted Functional Partners:
DM42_5331
Conserved hypothetical protein
    0.953
DM42_3236
annotation not available
  
    0.722
bcp_2
annotation not available
  
    0.722
rpmI
Large subunit ribosomal protein l35; Belongs to the bacterial ribosomal protein bL35 family
   
    0.710
DM42_6903
annotation not available
 
    0.672
DM42_5329
annotation not available
  
    0.661
DM42_5330
Hypothetical protein; DUF2269 domain-containing protein
       0.626
DM42_5333
Glutathione S-transferase, N-terminal domain protein
       0.622
atpG
F-type h+-transporting atpase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
  
    0.511
DM42_5328
Marr family protein; Belongs to the GbsR family
       0.502
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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