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DM42_5360 protein (Burkholderia cepacia) - STRING interaction network
"DM42_5360" - Conserved hypothetical protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5360Conserved hypothetical protein (197 aa)    
Predicted Functional Partners:
DM42_6830
annotation not available (1197 aa)
   
          0.670
DM42_2310
annotation not available (217 aa)
   
          0.639
pgaA
PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (877 aa)
   
          0.638
DM42_6900
annotation not available (337 aa)
   
          0.636
DM42_6003
Conserved hypothetical protein (225 aa)
   
          0.616
DM42_2885
Conserved hypothetical protein (753 aa)
   
          0.570
WL94_14615
annotation not available (214 aa)
   
          0.563
DM42_3791
Conserved hypothetical protein (188 aa)
   
          0.559
DM42_3849
Conserved hypothetical protein (272 aa)
   
          0.552
WI67_28255
Uncharacterized protein (129 aa)
   
          0.545
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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