STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dkgBannotation not available (268 aa)    
Predicted Functional Partners:
DM42_5366
annotation not available
  
  
 0.680
DM42_5370
annotation not available
 
    0.679
DM42_270
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein
  
  
 0.676
iolG
Myo-inositol 2-dehydrogenase / d-chiro-inositol 1-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose)
  
  
 0.676
rhlE
Atp-dependent rna helicase rhle; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA
      
 0.637
DM42_5368
Luciferase-type oxidoreductase, BA3436 family protein; lucif_BA3436: luciferase-type oxidoreductase, BA3436 family protein
 
     0.637
DM42_5365
annotation not available
       0.609
DM42_5369
annotation not available
       0.554
DM42_5371
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
 
     0.520
tal
Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
  
 
 0.513
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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