STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5448Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein (403 aa)    
Predicted Functional Partners:
DM42_5444
N5,N10-methylene tetrahydromethanopterin reductase; FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein
    0.919
DM42_5447
Hypothetical protein; Uncharacterized protein
       0.902
DM42_4533
annotation not available
 
    0.809
ssuD
Alkanesulfonate monooxygenase, fmnh(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates
 
    0.805
DM42_6839
5,10-methylene tetrahydromethanopterin reductase; FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein
    0.790
ladA
annotation not available
    0.771
sfnG
LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG
 
     0.766
metN
D-methionine transport system atp-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
 
    0.753
DM42_3521
annotation not available
  
    0.745
DM42_3696
annotation not available
  
    0.730
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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