WL94_32530 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

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[Homology]

Score

WL94_32530

annotation not available (261 aa)

Predicted Functional Partners:

WL94_32535

0.990

WL94_32525

0.982

WL94_30445

0.956

WL94_29325

0.936

WL94_25675

0.932

WL94_32540

0.913

WL94_05365

0.813

WL94_24040

0.589

WL94_05820

0.584

WL94_24035

0.584

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WL94_05365	WL94_05820	DM42_6239	DM42_6334	annotation not available	annotation not available	0.584
WL94_05365	WL94_24035	DM42_6239	DM42_2833	annotation not available	annotation not available	0.584
WL94_05365	WL94_24040	DM42_6239	DM42_2832	annotation not available	annotation not available	0.589
WL94_05365	WL94_25675	DM42_6239	DM42_5316	annotation not available	annotation not available	0.929
WL94_05365	WL94_29325	DM42_6239	DM42_3512	annotation not available	annotation not available	0.931
WL94_05365	WL94_30445	DM42_6239	DM42_2103	annotation not available	annotation not available	0.951
WL94_05365	WL94_32525	DM42_6239	DM42_5551	annotation not available	annotation not available	0.938
WL94_05365	WL94_32530	DM42_6239	DM42_5550	annotation not available	annotation not available	0.813
WL94_05365	WL94_32535	DM42_6239	DM42_5549	annotation not available	annotation not available	0.947
WL94_05365	WL94_32540	DM42_6239	DM42_5548	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.687
WL94_05820	WL94_05365	DM42_6334	DM42_6239	annotation not available	annotation not available	0.584
WL94_05820	WL94_32530	DM42_6334	DM42_5550	annotation not available	annotation not available	0.584
WL94_24035	WL94_05365	DM42_2833	DM42_6239	annotation not available	annotation not available	0.584
WL94_24035	WL94_24040	DM42_2833	DM42_2832	annotation not available	annotation not available	0.858
WL94_24035	WL94_32530	DM42_2833	DM42_5550	annotation not available	annotation not available	0.584
WL94_24040	WL94_05365	DM42_2832	DM42_6239	annotation not available	annotation not available	0.589
WL94_24040	WL94_24035	DM42_2832	DM42_2833	annotation not available	annotation not available	0.858
WL94_24040	WL94_32530	DM42_2832	DM42_5550	annotation not available	annotation not available	0.589
WL94_25675	WL94_05365	DM42_5316	DM42_6239	annotation not available	annotation not available	0.929
WL94_25675	WL94_29325	DM42_5316	DM42_3512	annotation not available	annotation not available	0.823

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