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choW protein (Burkholderia cepacia) - STRING interaction network
"choW" - ABC_choXWV_perm: choline ABC transporter, permease protein in Burkholderia cepacia
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choWABC_choXWV_perm- choline ABC transporter, permease protein (298 aa)    
Predicted Functional Partners:
WI67_30070
Glycine betaine/L-proline ABC transporter ATP-binding protein; proV- glycine betaine/L-proline transport ATP binding subunit (389 aa)
  0.999
WI67_29450
annotation not available (287 aa)
 
  0.997
WI67_30055
ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein (315 aa)
 
  0.988
WL94_35605
ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein (322 aa)
 
  0.987
WL94_35505
ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein (317 aa)
 
  0.986
WL94_01220
ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein (314 aa)
 
  0.981
WI67_30060
annotation not available (332 aa)
 
          0.689
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (917 aa)
              0.519
DM42_6603
annotation not available (303 aa)
 
   
  0.493
DM42_6601
proV- glycine betaine/L-proline transport ATP binding subunit (391 aa)
     
  0.443
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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