STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choWGlycine betaine/proline transport system permease protein; ABC_choXWV_perm: choline ABC transporter, permease protein (298 aa)    
Predicted Functional Partners:
ProV
Glycine betaine/proline transport system atp-binding protein; Glycine betaine/L-proline ABC transporter ATP-binding protein; proV: glycine betaine/L-proline transport ATP binding subunit
 0.999
DM42_5673
annotation not available
 
 0.998
opuAC_1
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
 0.994
choX
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
 0.993
DM42_5696
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
 0.992
ChoX
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
 0.989
DM42_4855
ccmA: heme ABC exporter, ATP-binding protein CcmA
     
 0.840
lptB_3
annotation not available
 
   
  0.836
DM42_3523
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
     
 0.834
DM42_6433
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
 
   
 0.834
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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