STRINGSTRING
DM42_5597 protein (Burkholderia cepacia) - STRING interaction network
"DM42_5597" - soxB: sarcosine oxidase, beta subunit in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5597soxB- sarcosine oxidase, beta subunit (414 aa)    
Predicted Functional Partners:
WL94_25230
soxA- sarcosine oxidase, alpha subunit; Belongs to the GcvT family (1003 aa)
  0.996
WI67_29895
annotation not available (210 aa)
 
 
    0.993
soxD
annotation not available (104 aa)
 
 
    0.993
WI67_31440
annotation not available (337 aa)
   
 
    0.916
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (975 aa)
     
 
  0.912
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA (399 aa)
       
  0.903
WL94_25215
Sda_mono- L-serine ammonia-lyase (461 aa)
 
     
  0.858
WL94_25240
annotation not available (146 aa)
 
          0.823
WL94_11085
annotation not available (383 aa)
   
   
 
0.813
WL94_35670
annotation not available (413 aa)
 
        0.790
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (13%) [HD]