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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqqEPQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE; Belongs to the radical SAM superfamily. PqqE family (379 aa)    
Predicted Functional Partners:
pqqB
Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm
 
  
 0.996
pqqC
Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
 
  
 0.990
pqqD
PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
 
  
 0.985
WL94_36000
Pyrrolo-quinoline quinone; PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family protein
 
   
 0.831
DM42_5621
annotation not available
 
     0.642
gmr
annotation not available
      
 0.478
DM42_1591
annotation not available
   
 
 0.444
DM42_1593
Conserved hypothetical protein
   
 
 0.444
WL94_31635
annotation not available
   
 
 0.444
DM42_1595
annotation not available
   
 
 0.434
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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