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STRINGSTRING
DM42_5662 protein (Burkholderia cepacia) - STRING interaction network
"DM42_5662" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5662annotation not available (469 aa)    
Predicted Functional Partners:
DM42_5324
annotation not available (192 aa)
   
          0.702
pgaA
PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (877 aa)
   
     
  0.673
WL94_22880
annotation not available (74 aa)
   
          0.651
DM42_393
Conserved hypothetical protein (580 aa)
 
 
  0.643
DM42_2885
Conserved hypothetical protein (753 aa)
 
          0.628
DM42_2718
annotation not available (84 aa)
   
          0.624
WL94_15115
annotation not available (94 aa)
   
          0.576
WL94_12835
annotation not available (229 aa)
 
     
  0.575
WL94_21680
DUF4440 domain-containing protein (131 aa)
   
          0.571
WL94_01590
annotation not available (362 aa)
   
 
 
  0.546
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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