STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5682annotation not available (416 aa)    
Predicted Functional Partners:
DM42_5683
annotation not available
 
  
 0.901
DM42_5118
annotation not available
  
 0.642
DM42_6961
Thermolysin metallopeptidase, catalytic domain protein; Extracellular zinc metalloprotease
 
  
 0.635
DM42_5119
annotation not available
  
   
 0.634
DM42_5115
Ribosomal protein s12 methylthiotransferase accessory factor; Cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain
  
     0.545
DM42_5681
Heavy-metal-binding family protein; Belongs to the UPF0145 family
       0.531
DM42_6703
annotation not available
 
     0.514
DM42_6205
annotation not available
  
  
 0.469
DM42_6694
annotation not available
  
     0.460
DM42_1349
annotation not available
  
 
 0.443
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (12%) [HD]