STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdH3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine (321 aa)    
Predicted Functional Partners:
DM42_5699
Acyl-coa thioester hydrolase; 4-hydroxybenzoyl-CoA thioesterase
  
 0.994
DM42_5697
Hypothetical protein; NADPH:quinone reductase
 
  
 0.931
DM42_5701
annotation not available
 
   
 0.901
DM42_5700
annotation not available
  
    0.800
DM42_2413
annotation not available
   
  
 0.667
DM42_3625
Hypothetical protein; 3-keto-5-aminohexanoate cleavage protein
 
  
 0.640
DM42_5696
Glycine betaine/proline transport system substrate-binding protein; ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
     0.560
DM42_2073
annotation not available
 
 0.500
DM42_2298
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein
 
 
 0.474
DM42_3312
Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family
 
 
 0.474
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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