STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuFFerric iron reductase protein fhuf; Iron reductase; fe_III_red_FhuF: siderophore-iron reductase FhuF (266 aa)    
Predicted Functional Partners:
DM42_56
annotation not available
 
  
 0.973
fhuB
Ferric hydroxamate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
 
  
 0.968
DM42_59
annotation not available
 
  
 0.936
DM42_60
annotation not available
 
   
 0.905
mbtH
annotation not available
  
  
 0.833
fecI_3
Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily
 
  
 0.826
DM42_55
Putative pyoverdin transport system atp-binding/permease protein; Cyc_pep_trnsptr: cyclic peptide transporter family protein
 
  
 0.792
DM42_49
annotation not available
 
   
 0.657
pvdA
Fad-nad(p)-binding family protein; Catalyzes the conversion of L-ornithine to N(5)- hydroxyornithine, the first step in the biosynthesis of all hydroxamate-containing siderophores, such as ornibactin
 
   
 0.645
DM42_5941
annotation not available
  
     0.642
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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