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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuFIron reductase; fe_III_red_FhuF: siderophore-iron reductase FhuF (266 aa)    
Predicted Functional Partners:
DM42_56
annotation not available
 
  
 0.973
WL94_28970
annotation not available
 
  
 0.969
WL94_28965
annotation not available
 
  
 0.933
WL94_28960
annotation not available
 
   
 0.900
VL15_05360
annotation not available
  
  
 0.821
WI67_08135
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein
 
  
 0.817
WL94_28985
Cyc_pep_trnsptr: cyclic peptide transporter family protein
 
  
 0.781
pvdA
L-ornithine N(5)-monooxygenase; Catalyzes the conversion of L-ornithine to N(5)- hydroxyornithine, the first step in the biosynthesis of all hydroxamate-containing siderophores, such as ornibactin
 
   
 0.642
WL94_38880
annotation not available
  
     0.642
WL94_29015
annotation not available
 
   
 0.639
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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