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DM42_5738 protein (Burkholderia cepacia) - STRING interaction network
"DM42_5738" - Conserved hypothetical protein in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5738Conserved hypothetical protein (154 aa)    
Predicted Functional Partners:
WL94_13665
Uncharacterized protein; Rhs_assc_core- RHS repeat-associated core domain protein (1440 aa)
 
     
  0.960
WL94_35370
Type VI secretion protein; vgr_GE- Rhs element Vgr family protein (712 aa)
 
   
  0.907
DM42_7342
Rhs_assc_core- RHS repeat-associated core domain protein (1399 aa)
 
   
  0.795
DM42_4902
Conserved hypothetical protein (151 aa)
   
          0.670
DM42_3398
Conserved hypothetical protein (158 aa)
   
          0.669
WL94_35360
Type IV secretion protein Rhs; Rhs_assc_core- RHS repeat-associated core domain protein (473 aa)
 
     
  0.642
DM42_1848
annotation not available (278 aa)
   
          0.636
DM42_4912
Conserved hypothetical protein (99 aa)
   
          0.619
DM42_6816
annotation not available (4237 aa)
   
          0.591
DM42_1849
annotation not available (536 aa)
   
          0.587
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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