STRINGSTRING
dgdR protein (Burkholderia cepacia) - STRING interaction network
"dgdR" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgdRannotation not available (285 aa)    
Predicted Functional Partners:
dgdA
2,2-dialkylglycine decarboxylase; The dialkylglycine decarboxylase is of interest because it normally catalyzes both decarboxylation and amino transfer. It may be more properly described as a decarboxylating aminotransferase rather than an aminotransferring decarboxylase (433 aa)
 
          0.748
DM42_6608
annotation not available (316 aa)
   
     
  0.656
WL94_09205
annotation not available (292 aa)
   
          0.637
DM42_6653
annotation not available (304 aa)
   
     
  0.557
WL94_34085
annotation not available (301 aa)
   
          0.556
DM42_5694
annotation not available (293 aa)
   
          0.544
DM42_4495
annotation not available (291 aa)
   
          0.517
DM42_4693
annotation not available (317 aa)
   
     
  0.491
DM42_6774
annotation not available (306 aa)
   
          0.470
DM42_3932
annotation not available (349 aa)
   
          0.465
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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