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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_591annotation not available (146 aa)    
Predicted Functional Partners:
DM42_590
Conserved hypothetical protein
 
   
 0.949
DM42_589
Conserved hypothetical protein
 
  
 0.931
DM42_592
topB: DNA topoisomerase III family protein
 
 
 0.903
DM42_586
annotation not available
 
  
 0.844
DM42_587
Conserved hypothetical protein
 
    0.842
DM42_588
Conserved hypothetical protein
 
    0.842
DM42_583
annotation not available
 
   
 0.824
traD
conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class
 
    0.821
DM42_622
SNF2 family N-terminal domain protein
 
   0.819
DM42_618
annotation not available
 
  
 0.818
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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