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DM42_592 protein (Burkholderia cepacia) - STRING interaction network
"DM42_592" - topB: DNA topoisomerase III family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_592topB- DNA topoisomerase III family protein (676 aa)    
Predicted Functional Partners:
DM42_591
annotation not available (146 aa)
 
 
  0.903
DM42_622
SNF2 family N-terminal domain protein (759 aa)
 
 
  0.863
DM42_590
Conserved hypothetical protein (175 aa)
 
     
  0.857
DM42_589
Conserved hypothetical protein (263 aa)
 
   
  0.844
DM42_586
annotation not available (559 aa)
 
   
  0.800
traD
conj_TOL_TraD- conjugative coupling factor TraD, PFGI-1 class (728 aa)
 
   
  0.790
DM42_649
annotation not available (308 aa)
   
        0.785
traI
ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (614 aa)
 
     
  0.784
DM42_642
Conserved hypothetical protein (305 aa)
   
        0.782
DM42_641
Conserved hypothetical protein (229 aa)
   
        0.782
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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