STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5940annotation not available (548 aa)    
Predicted Functional Partners:
uca
Urea_carbox: urea carboxylase
  
  
 0.834
DM42_5939
Conserved hypothetical protein
       0.539
DM42_2735
annotation not available
     
 0.493
DM42_5299
annotation not available
 
 
   0.493
DM42_5843
annotation not available
      
 0.489
infB
Translation initiation factor if-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
      
 0.485
DM42_2551
Hypothetical protein; Uncharacterized protein
  
     0.451
DM42_2469
Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family
 
  
 0.423
hoxN
Nickel/cobalt transporter (nicot) family protein; Belongs to the NiCoT transporter (TC 2.A.52) family
  
  
 0.423
DM42_6127
Methyltransferase, family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
  
     0.420
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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