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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5945type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family (681 aa)    
Predicted Functional Partners:
DM42_5949
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family
 
 
 0.964
DM42_5944
fliQ_rel_III: type III secretion , HrpO family protein
 
  
 0.956
DM42_5943
hrcV: type III secretion , HrcV family protein
 
  
 0.951
DM42_5951
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
 
  
 0.890
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family
 
  
 0.863
DM42_5946
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
     
 0.855
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT
 
  
 0.828
DM42_342
annotation not available
 
  
 0.731
DM42_5955
annotation not available
 
  
 0.682
DM42_1824
Conserved hypothetical protein
  
     0.657
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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