STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5987Hypothetical protein; Belongs to the FGGY kinase family (515 aa)    
Predicted Functional Partners:
rpe
Belongs to the ribulose-phosphate 3-epimerase family
 
 0.947
xylA
Belongs to the xylose isomerase family
 
 
 0.947
DM42_2484
annotation not available
 
 0.933
DM42_5056
annotation not available
  
 0.924
DM42_4539
L-ribulose-5-phosphate 4-epimerase; Class II Aldolase and Adducin N-terminal domain protein
    
 0.909
DM42_5988
annotation not available
 
   
 0.892
DM42_5986
annotation not available
 
 
 0.877
DM42_5984
Ribose transport system atp-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system
  
 0.685
DM42_5985
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
  
  
 0.653
DM42_5983
annotation not available
 
  
 0.629
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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