STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_5988annotation not available (252 aa)    
Predicted Functional Partners:
DM42_5987
Hypothetical protein; Belongs to the FGGY kinase family
 
   
 0.892
DM42_5986
annotation not available
 
 0.872
DM42_5985
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
       0.618
DM42_5983
annotation not available
 
 
   0.615
DM42_5984
Ribose transport system atp-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system
       0.610
DM42_1047
annotation not available
  
 0.601
btr_6
annotation not available
 
     0.529
DM42_6251
annotation not available
  
 
  0.477
DM42_696
Peptidase do family protein; Belongs to the peptidase S1C family
  
 
  0.431
degQ
Peptidase do family protein; Belongs to the peptidase S1C family
  
 
  0.426
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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