STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6103annotation not available (265 aa)    
Predicted Functional Partners:
DM42_6104
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family
 
 0.980
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate
 
    0.974
DM42_6102
annotation not available
 
    0.940
DM42_6101
annotation not available
 
     0.939
DM42_6100
annotation not available
 
     0.935
DM42_6107
annotation not available
 
   0.930
DM42_6098
annotation not available
 
   
 0.912
DM42_6097
Hypothetical protein; Uncharacterized protein
 
     0.881
DM42_6106
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family
 
   0.811
DM42_6099
annotation not available
   
0.779
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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