STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6197efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein (475 aa)    
Predicted Functional Partners:
WL94_05140
annotation not available
 
     0.864
DM42_7233
annotation not available
  
     0.704
WL94_05145
annotation not available
 
     0.700
DM42_7037
RND_mfp: efflux transporter, RND family, MFP subunit
  
   
 0.490
DM42_7234
RND_mfp: efflux transporter, RND family, MFP subunit
  
   
 0.481
WI67_20985
RND_mfp: efflux transporter, RND family, MFP subunit
  
   
 0.480
DM42_6200
Conserved hypothetical protein
       0.464
DM42_4956
RND_mfp: efflux transporter, RND family, MFP subunit
  
   
 0.461
WI67_25645
annotation not available
 
     0.456
WL94_26600
Multidrug ABC transporter permease; RND_mfp: efflux transporter, RND family, MFP subunit
  
   
 0.426
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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