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DM42_6287 protein (Burkholderia cepacia) - STRING interaction network
"DM42_6287" - GGDEF: diguanylate cyclase domain protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6287GGDEF- diguanylate cyclase domain protein (590 aa)    
Predicted Functional Partners:
DM42_6286
annotation not available (376 aa)
 
     
  0.956
WL94_08570
annotation not available (791 aa)
 
 
 
  0.839
WI67_05930
annotation not available (426 aa)
 
  0.829
DM42_5635
annotation not available (588 aa)
 
  0.824
WL94_09115
GGDEF- diguanylate cyclase domain protein (748 aa)
 
 
0.820
DM42_1572
annotation not available (751 aa)
     
 
  0.819
WL94_27110
annotation not available (769 aa)
     
 
  0.812
DM42_7319
annotation not available (1380 aa)
   
 
  0.809
WI67_30170
annotation not available (267 aa)
 
  0.790
WI67_32325
annotation not available (749 aa)
 
 
  0.788
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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